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Fig. 3 | Antimicrobial Resistance & Infection Control

Fig. 3

From: Non-typhoidal Salmonella transmission reservoirs in Sub-Saharan Africa: a genomic assessment from a one health perspective

Fig. 3

Core genome MLST-based phylogenetic tree of 222 non-typhoidal Salmonella enterica genomes found in Ghana and Tanzania. Descriptions from the outside to the inside: 1) Heatmap of AMR genes identified with the Resfinder software, excluding aminoglycoside resistance genes. 2) Origin of samples: human (blood, stool from children with diarrhoea, stool from children without diarrhoea); environmental samples nearby animal farms (soil, dust); livestock samples, mainly poultry (faeces); pooled faecal chicken samples (pooled). 3) MLST sequence types. 4) Salmonella serovars. 5) Country of origin (grey = Ghana, purple = Tanzania. 6) Clades of invasive strains coloured by sequence types: light green (ST313; S. Typhimurium), dark green (ST19; S. Typhimurium), purple (ST11, ST1479; S. Enteritidis), blue (ST10; S. Dublin)

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Antimicrobial Resistance & Infection Control

ISSN: 2047-2994

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