Fig. 6

Global phylogeny of lineage ST307. Maximum likelihood phylogenetic tree of ST307 genomes (n = 1,110). The core genome at 90% had 4,393 genes and resulted in an alignment of 4,268,326 bp with 16,936 variant positions (~ 3,967 SNPs/Mbp). Clades containing SKPCV isolates are highlighted in gray. Dots at the end of the tips are colored by the hospital where they were collected. The inner ring depicts the geographic origin. The second ring marks the presence or absence of the blaCTX-M-15 and the third the coverage of the pCTX-M-15 assembled in this work. The fourth is the presence of blaOXA-48 whereas the outermost ring is the coverage of the pOXA-48 assembled in this work