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Fig. 3 | Antimicrobial Resistance & Infection Control

Fig. 3

From: The rapid detection of a neonatal unit outbreak of a wild-type Klebsiella variicola using decentralized Oxford Nanopore sequencing

Fig. 3

Maximum-likelihood phylogeny of Klebsiella variicola isolates from Wellington Regional Hospital. The phylogeny was inferred from 178,995 core-genome single-nucleotide variants (SNVs) from 50 genomes. SNVs were derived from a core-genome alignment of 4,283,084 bp and were called against the chromosome of sample kv240612_barcode19 (GenBank: CP165787). The phylogenetic tree is rooted according to the kv220615_barcode15 outgroup. Bootstrap values > 80 % (1,000 replicates) are shown

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Antimicrobial Resistance & Infection Control

ISSN: 2047-2994

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